PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0035.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 241aa    MW: 26019 Da    PI: 9.168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2099147355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++a+ +++g
  Kaladp0066s0035.1.p  99 YRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFPTPEEAARAYDQAAIRIRG 147
                          9*******.**********954...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3798161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3298156IPR001471AP2/ERF domain
PROSITE profilePS5103225.14698155IPR001471AP2/ERF domain
PfamPF008471.5E-1498147IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2398156IPR016177DNA-binding domain
CDDcd000184.21E-3299156No hitNo description
PRINTSPR003672.7E-1199110IPR001471AP2/ERF domain
PRINTSPR003672.7E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTPSSSPLLS SCSLNPKLTK MCGGAVISSF IGGNRDRNLT TRDFWHQLDP SSDLFGFNST  60
TKSKTPITAA DQNPKEKKSG NETNGAAGGK PQRVRKTAYR GIRRRPWGKW AAEIRDPRKG  120
VRVWLGTFPT PEEAARAYDQ AAIRIRGDKA KLNFPEKRRR VEPDELTHPS YERVGPGLAG  180
ADDGSLICGQ NQRSVAGSGL EDTISDLESL LGLDDGSGSG YLNGLGDPVD LGWMDGDWSI  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2199155663ATERF1
3gcc_A1e-2199155663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035662.12e-54Ethylene-responsive element binding protein, putative
SwissprotP427361e-41RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A061EPL03e-54A0A061EPL0_THECC; Ethylene-responsive element binding protein, putative
STRINGGLYMA09G04630.19e-49(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-42ethylene-responsive element binding protein